
Mobile Element Research Group
About the Group
The group's field of work and goals.
The Mobile Element Research Group investigates how mobile genetic elements relate to genomic diversity, gene expression, and responses to environmental stress. Our work focuses on retrotransposons and endogenous retroviruses, using molecular methods to examine their distribution and variation among individuals in plant and human samples.
We use retrotransposon-based markers in plants such as rice, barley, and maize to evaluate genetic diversity, changes associated with tissue culture, and responses to stress. Studies of endogenous retrovirus polymorphisms in human samples, together with research on DNA damage and repair, extend this work on genome dynamics across biological systems.
Team
The group's academic staff and graduate students.

PhD and Master's Students

Elif Zeynep Benli
Visiting Researchers
Research Topics
The scientific questions the group focuses on.
Mobile Genetic Elements
Retrotransposons
Endogenous Retroviruses
Projects
Ongoing and completed research projects.
Optimization of the Comet Assay to Detect DNA Damage in Schizosaccharomyces pombe
Determination of DNA damage and DNA repair in children with chronic kidney disease who had COVID-19
Physiological and biochemical responses and retrotransposon variation in different Kosovo local maize genotypes under drought stress
Identification of Reference Genes for RT-qPCR-Based Gene Expression Analyses in the Yeast Schizosaccharomyces pombe
Development of Reference Gene Primers for qPCR-Based Gene Expression Analyses in Schizosaccharomyces pombe
Development of a Retrotransposon-Based Marker Method for Breast Cancer Diagnosis
Development of a Retrotransposon-Based Marker Method in Saccharomyces cerevisiae
Determination of Culture Duration-Dependent DNA Methylation Changes in Mouse Embryonic Fibroblasts
Development of a CBDP-Based Polymorphism Assay in Rice (Oryza sativa)
Identification of Human Endogenous Retroviruses as Potential Markers for Nasal Polyposis Diagnosis
Genome-Wide and Gene-Specific Epigenetic Analyses in Fusarium Species
Effects of Herbicides on Transposon Movements in Rice (Oryza sativa L.)
Determination of the Effect of Abiotic Stress on Retrotransposon Mobility in Schizosaccharomyces pombe
Transposon Analyses in Rice (Oryza sativa L.)
Determination of Retrotransposon Movements and Their Products in Barley (Hordeum vulgare L.) Tissue Culture
Publications
The group's work published in peer-reviewed journals.
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2026
Jakupi M., Demirbaş S., Yilmaz S., Aliu S.
Tekirdağ Ziraat Fakültesi Dergisi 23(3): 1078-1090
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2024
Ibisoglu M. S., Tan M., Yilmazer M., Yilmaz S., Uzuner S. K., Topal-Sarikaya A., Palabiyik B.
Archives of Microbiology 206(4): 155
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2022
ARICAN E., DEMİRBAŞ S.
Journal of Agricultural Sciences (Tarım Bilimleri Dergisi) 28(4): 592–602
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2022
Arı T., Demirbaş S., Bilgen B. B.
International Journal of Innovative Approaches in Agricultural Research 6(4): 303-317
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2020
Investigation of rice (Oryza sativa L.) retrotransposons in different taxa
Tufan A. F., Ibisoglu M. S., Yilmaz S., Gozukirmizi N.
Genetic Resources and Crop Evolution 67(6): 1473-1479
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2019
IRAP-PCR As A Tool For Screening HERV Polymorphisms In Nasal Mucosal Swabs
Kepekçi A. H., İbişoğlu M. S., Yılmaz S., Kığ C.
ENT Updates
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2018
Short-term mutagenicity test by using IRAP molecular marker in rice grown under herbicide treatment
Yilmaz S., Marakli S., Yuzbasioglu G., Gozukirmizi N.
Biotechnology & Biotechnological Equipment 32(4): 923-928
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2017
DNA fingerprinting in rice (Oryza sativa L.) with transposon markers
Gozukirmizi N., Yuzbasioglu G., Yilmaz S.
Acta Horticulturae (1187): 251-260
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2016
Transposon Activity in Plant Genomes
Gozukirmizi N., Temel A., Marakli S., Yilmaz S.
Plant Omics: Trends and Applications Springer International Publishing, pp. 83-108
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2016
Analysis of Hopi/Osr27 and Houba/Tos5/Osr13 Retrotransposons in Rice
Yuzbasioglu G., Yilmaz S., Marakli S., Gozukirmizi N.
Biotechnology & Biotechnological Equipment 30(2): 213-218
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2016
Houba retrotransposon-based molecular markers: a tool for variation analysis in rice
YÜZBAŞIOĞLU G., YILMAZ S., GÖZÜKIRMIZI N.
TURKISH JOURNAL OF AGRICULTURE AND FORESTRY 40: 456-464
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2015
Yilmaz S., Gozukirmizi N., Scott R. J., Taskin K. M.
Plant Cell Biotechnology and Molecular Biology 16(1–2): 74–83
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2014
Effects of epirubicin on barley seedlings
Hamat-Mecbur H., Yilmaz S., Temel A., Sahin K., Gozukirmizi N.
Toxicology and Industrial Health 30(1): 52-59
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2014
BAGY2 Retrotransposon Analyses in Barley Calli Cultures and Regenerated Plantlets
Yilmaz S., Marakli S., Gozukirmizi N.
Biochemical Genetics 52(5-6): 233-244
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2014
Changes in human sirtuin 6 gene promoter methylation during aging
SAHIN K., YILMAZ S., GOZUKIRMIZI N.
Biomedical Reports 2(4): 574-578
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2014
Sukkula retrotransposon insertion polymorphisms in barley
Kartal-Alacam G., Yilmaz S., Marakli S., Gozukirmizi N.
Russian Journal of Plant Physiology 61(6): 828-833
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2013
Transformation of Nicotiana tabacum with dehE gene
Kaya Y., Yilmaz S., Marakli S., Gozukirmizi N., Huyop F.
Journal of Food, Agriculture & Environment 11(3–4): 777–780
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2013
Evaluation of Transgenic Nicotiana tabacum with dehE Gene Using Transposon Based IRAP Markers
Kaya Y., Yilmaz S., Gozukirmizi N., Huyop F.
American Journal of Plant Sciences 04(08): 41-44
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2013
Human endogenous retrovirus-H insertion screening
GULIYEV M., YILMAZ S., SAHIN K., MARAKLI S., GOZUKIRMIZI N.
Molecular Medicine Reports 7(4): 1305-1309
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2013
Variation of Retrotransposon Movement in Callus Culture and Regenerated Shoots of Barley
Yilmaz S., Gozukirmizi N.
Biotechnology & Biotechnological Equipment 27(6): 4227-4230
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2012
Nikita retrotransposon movements in callus cultures of barley (Hordeum vulgare L.)
Bayram E., Yilmaz S., Hamat-Mecbur H., Kartal-Alacam G., Gozukirmizi N.
Plant Omics 5(3): 211–215
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2012
BARE1 and BAGY2 Retrotransposon Movements and Expression Analyses in Developing Barley Seedlings
Marakli S., Yilmaz S., Gozukirmizi N.
Biotechnology & Biotechnological Equipment 26(6): 3451-3456
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2011
DNA methylation variations between mono- and dizygotic twins
Sahin K., Yilmaz S., Temel A., Gozukirmizi N.
Romanian Biotechnological Letters 16(4): 6460–6466
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2011
Variations in BARE-1 insertion patterns in barley callus cultures
Evrensel C., Yilmaz S., Temel A., Gozukirmizi N.
Genetics and Molecular Research 10(2): 980-987
Conferences
National and international conference contributions.
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2025
Yılmaz S., Özdemir K., Salaş C. B., Beyaz S. Y., İbişoğlu M. S., Kankaya S., et al.
International 8th Bursa Scientific Research Congress Türkiye, 16 December 2025
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2025
Antioxidant Responses of Kosovo Maize Genotypes to PEG-Induced Drought Stress
Jakupi M., Demirbaş S., Yılmaz S.
7th Eurasia Biochemical Approaches & Technologies Congress (EBAT 2025)
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2025
Jakupi M., Yılmaz S., Demirbaş S.
7th Eurasia Biochemical Approaches & Technologies Congress (EBAT 2025)
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2024
Optimization of CBDP marker to determine allelic variation in rice cultivars (Oryza sativa L.)
İbişoğlu M.S., Sefer Ö., Yörük E., Yılmaz S.
XV International Scientific Agriculture Symposium (Agrosym 2024) Sarajevo, Bosnia and Herzegovina
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2023
İbişoğlu M. S., Palabıyık B., Yılmaz S., Topal Sarıkaya A.
31st International Conference on Yeast Genetics and Molecular Biology (ICYGMB 2023)
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2020
Genome-wide and gene-specific epigenetic analyses in Fusarium species
Sefer Ö., İbişoğlu M.S., Yörük E., Yılmaz S.
IV. International Eurasian Agriculture and Natural Sciences Congress
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2019
Retrotransposon Mediated Biodiversity
İbişoğlu M. S., Tufan A. F., Yılmaz S.
2nd International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2019)
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2019
HERV Polymorphisms: A Potential Diagnostic Marker for Nasal Polyposis
Kepekçi A. H., İbişoğlu M. S., Yılmaz S., Kığ C.
2nd International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2019)

